MLOC_37477 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.823764.616324.525454.63571
LEAShoots from the seedlings (10 cm shoot stage)13.654318.029412.785214.2389
INF1Young developing inflorescences (5mm)3.929323.593715.185923.77102
INF2Developing inflorescences (1-1.5 cm)6.424155.033135.816426.83191
ROORoots from the seedlings (10 cm shoot stage)2.429565.765184.309327.67116
NODDeveloping tillers at six leaf stage, 3rd internode6.183966.575846.4948425.2534
CAR5Developing grain, bracts removed (5 DPA)5.483548.298686.372987.52805
CAR15Developing grain, bracts removed (15 DPA)4.876764.455284.3317511.7692



CDS Structure of MLOC_37477






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37477.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_37477.1CUST_11510_PI427708080AvailableAvailablecontig_2548485 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g38870.1 +2 1e-46 156 94/113 (83%) 13111.m03823 protein helix-loop-helix DNA-binding domain containing protein, expressed
TAIR PP10 AT3G47640.3 +2 1e-20 86 42/81 (52%) | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:17568035-17569101 FORWARD LENGTH=240