MLOC_37450 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains685.81649.774598.597620.137
LEAShoots from the seedlings (10 cm shoot stage)332.159170.277179.334200.018
INF1Young developing inflorescences (5mm)1138.21034.411014.77869.389
INF2Developing inflorescences (1-1.5 cm)768.528673.723764.588760.097
ROORoots from the seedlings (10 cm shoot stage)398.624503.311547.466575.877
NODDeveloping tillers at six leaf stage, 3rd internode47.341336.382688.5624158.046
CAR5Developing grain, bracts removed (5 DPA)501.477494.906545.384475.146
CAR15Developing grain, bracts removed (15 DPA)233.765223.93200.13469.346



CDS Structure of MLOC_37450






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37450.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250782.1NoneNoneNoneNone
MLOC_37450.1CUST_199_PI427708083AvailableAvailablecontig_2548421 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g67134.1 +2 1e-163 472 261/291 (90%) 13101.m07281 protein ribosomal L18p/L5e family protein, putative, expressed
TAIR PP10 AT3G25520.1 +2 1e-142 417 229/291 (79%) | Symbols: ATL5, PGY3, OLI5, RPL5A | ribosomal protein L5 | chr3:9269573-9271327 REVERSE LENGTH=301