MLOC_37433 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.349093.413322.947743.48562
LEAShoots from the seedlings (10 cm shoot stage)1.404471.575441.638211.37229
INF1Young developing inflorescences (5mm)4.805054.369384.883864.11003
INF2Developing inflorescences (1-1.5 cm)5.095974.325383.671725.10923
ROORoots from the seedlings (10 cm shoot stage)2.288962.57991.678183.19461
NODDeveloping tillers at six leaf stage, 3rd internode0.1195370.2031010.05171880.63047
CAR5Developing grain, bracts removed (5 DPA)4.307355.224825.424015.23894
CAR15Developing grain, bracts removed (15 DPA)1.458271.621011.092723.50839



CDS Structure of MLOC_37433






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37433.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_37433.1CUST_11504_PI427708080AvailableAvailablecontig_2548394 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g57630.3 +3 8e-167 489 246/394 (62%) 13101.m06117 protein pentatricopeptide containing protein, putative, expressed
TAIR PP10 AT3G13160.1 +3 2e-61 212 126/360 (35%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4229994-4231178 REVERSE LENGTH=394