MLOC_37420 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.27212.150416.630514.2746
LEAShoots from the seedlings (10 cm shoot stage)15.308965.161213.653324.0822
INF1Young developing inflorescences (5mm)12.090312.26269.716479.00558
INF2Developing inflorescences (1-1.5 cm)19.288424.741321.131422.1824
ROORoots from the seedlings (10 cm shoot stage)10.96579.753777.0206811.5669
NODDeveloping tillers at six leaf stage, 3rd internode1.532471.623941.381485.41245
CAR5Developing grain, bracts removed (5 DPA)25.6827.65632.093925.1961
CAR15Developing grain, bracts removed (15 DPA)31.440125.969827.740558.8225



CDS Structure of MLOC_37420






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37420.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_37420.1CUST_12226_PI427708083AvailableAvailablecontig_2548366 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g51690.3 +3 2e-40 143 74/87 (85%) 13105.m05586 protein CCT motif family protein, expressed
TAIR PP10 AT4G27900.2 +3 8e-20 88 46/79 (58%) CCT motif family protein | chr4:13890858-13892777 FORWARD LENGTH=261