MLOC_37400 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.8332.306833.268530.3941
LEAShoots from the seedlings (10 cm shoot stage)30.476511.812514.34416.3779
INF1Young developing inflorescences (5mm)9.9601910.52628.167027.99359
INF2Developing inflorescences (1-1.5 cm)8.462639.911168.01729.79688
ROORoots from the seedlings (10 cm shoot stage)18.191323.90217.471226.6602
NODDeveloping tillers at six leaf stage, 3rd internode56.897977.335366.3673239.704
CAR5Developing grain, bracts removed (5 DPA)12.890314.258313.445713.1864
CAR15Developing grain, bracts removed (15 DPA)5.044214.869896.3194811.8273



CDS Structure of MLOC_37400






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37400.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355040NoneNoneNoneNone
MLOC_37400.1CUST_2373_PI427708080AvailableAvailablecontig_2548323 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g39490.3 +2 0.0 1041 555/716 (78%) 13108.m04215 protein expressed protein
TAIR PP10 AT2G42320.2 +2 0.0 580 315/599 (53%) nucleolar protein gar2-related | chr2:17628102-17630657 FORWARD LENGTH=669