MLOC_37378 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains503.866352.591404.555443.281
LEAShoots from the seedlings (10 cm shoot stage)25.127492.45974.7794336.8364
INF1Young developing inflorescences (5mm)170.489243.623286.719235.291
INF2Developing inflorescences (1-1.5 cm)60.038953.288880.558676.9282
ROORoots from the seedlings (10 cm shoot stage)226.052222.4122.951268.188
NODDeveloping tillers at six leaf stage, 3rd internode222.15128.26937.2312306.07
CAR5Developing grain, bracts removed (5 DPA)1049.451067.781244.81252.82
CAR15Developing grain, bracts removed (15 DPA)87.101101.71480.6029251.487



CDS Structure of MLOC_37378






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37378.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251441.1NoneNoneNoneNone
MLOC_37378.1CUST_2370_PI427708080AvailableAvailablecontig_2548257 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g49350.1 +1 0.0 910 433/569 (76%) 13103.m05341 protein lipozygenase protein, putative, expressed
TAIR PP10 AT3G22400.1 +1 0.0 709 335/569 (59%) | Symbols: LOX5 | PLAT/LH2 domain-containing lipoxygenase family protein | chr3:7927011-7931167 FORWARD LENGTH=886