MLOC_37340 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.398212.938213.653412.0872
LEAShoots from the seedlings (10 cm shoot stage)12.28247.462399.736388.15727
INF1Young developing inflorescences (5mm)16.2717.153318.856213.9348
INF2Developing inflorescences (1-1.5 cm)19.302522.65120.23521.3768
ROORoots from the seedlings (10 cm shoot stage)9.2599913.17319.9337813.5693
NODDeveloping tillers at six leaf stage, 3rd internode7.400669.3024610.954730.1855
CAR5Developing grain, bracts removed (5 DPA)20.72421.222522.203619.0561
CAR15Developing grain, bracts removed (15 DPA)6.930766.604927.0825115.0922



CDS Structure of MLOC_37340






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37340.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362907NoneNoneNoneNone
MLOC_37340.1CUST_198_PI427708083AvailableAvailablecontig_2548197 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g38670.1 +1 5e-168 510 256/277 (92%) 13111.m03802 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT2G42520.1 +1 4e-157 481 238/277 (86%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:17705382-17708744 FORWARD LENGTH=633