MLOC_37287 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.5476313.125711.360815.1264
LEAShoots from the seedlings (10 cm shoot stage)10.00689.412619.03619.19359
INF1Young developing inflorescences (5mm)24.334428.999225.678426.91
INF2Developing inflorescences (1-1.5 cm)32.448733.683330.039545.3414
ROORoots from the seedlings (10 cm shoot stage)9.3206811.84449.7991817.7293
NODDeveloping tillers at six leaf stage, 3rd internode6.104827.067869.9613528.4685
CAR5Developing grain, bracts removed (5 DPA)17.334220.346916.178323.9745
CAR15Developing grain, bracts removed (15 DPA)4.553164.799773.9933313.5708



CDS Structure of MLOC_37287






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37287.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_37287.1CUST_12222_PI427708083AvailableAvailablecontig_2548117 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g05830.1 +2 8e-97 309 169/182 (93%) 13103.m00634 protein transposon protein, putative, CACTA, En/Spm sub-class, expressed
TAIR PP10 AT5G09880.1 +2 7e-89 286 146/194 (75%) Splicing factor, CC1-like | chr5:3081646-3085179 REVERSE LENGTH=527