MLOC_3728 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains34.674960.936548.178850.0634
LEAShoots from the seedlings (10 cm shoot stage)19.403411.609414.111911.6156
INF1Young developing inflorescences (5mm)25.114627.140526.449922.2077
INF2Developing inflorescences (1-1.5 cm)22.040725.012118.524624.7487
ROORoots from the seedlings (10 cm shoot stage)15.401824.445729.164525.2164
NODDeveloping tillers at six leaf stage, 3rd internode20.59610.299217.852628.5194
CAR5Developing grain, bracts removed (5 DPA)22.216828.509921.861523.8686
CAR15Developing grain, bracts removed (15 DPA)8.46735.981335.1861616.163



CDS Structure of MLOC_3728






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3728.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3728.1CUST_12221_PI427708083AvailableAvailablecontig_13297 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g38970.1 +3 3e-19 88 51/61 (84%) 13107.m04034 protein succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed
TAIR PP10 AT5G23250.2 +3 2e-14 73 37/54 (69%) Succinyl-CoA ligase, alpha subunit | chr5:7830460-7832265 FORWARD LENGTH=297