MLOC_37235 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.397715.078312.992612.808
LEAShoots from the seedlings (10 cm shoot stage)8.7719817.640429.889614.7693
INF1Young developing inflorescences (5mm)6.136.803927.826085.46298
INF2Developing inflorescences (1-1.5 cm)5.040567.030867.085776.33628
ROORoots from the seedlings (10 cm shoot stage)16.16415.989115.300817.2926
NODDeveloping tillers at six leaf stage, 3rd internode3.065713.025273.432659.26604
CAR5Developing grain, bracts removed (5 DPA)4.961724.40245.003054.13717
CAR15Developing grain, bracts removed (15 DPA)1.791451.449891.66463.5025



CDS Structure of MLOC_37235






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37235.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354206NoneNoneNoneNone
MLOC_37235.1CUST_2359_PI427708080AvailableAvailablecontig_2548022 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g11354.1 -1 0.0 723 368/481 (77%) 13110.m01034 protein MATE efflux family protein, putative, expressed
TAIR PP10 AT5G52450.1 -1 0.0 530 278/455 (61%) MATE efflux family protein | chr5:21289042-21291749 REVERSE LENGTH=486