MLOC_37208 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.505533.777193.781544.14692
LEAShoots from the seedlings (10 cm shoot stage)6.98110.710412.22868.80869
INF1Young developing inflorescences (5mm)2.547752.648483.463722.64818
INF2Developing inflorescences (1-1.5 cm)3.697832.654473.429443.76691
ROORoots from the seedlings (10 cm shoot stage)0.8681812.404062.239082.7741
NODDeveloping tillers at six leaf stage, 3rd internode3.085813.746255.1571213.3844
CAR5Developing grain, bracts removed (5 DPA)1.383872.088261.971412.03391
CAR15Developing grain, bracts removed (15 DPA)0.0469880.3622110.476760.68858



CDS Structure of MLOC_37208






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37208.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251296.1NoneNoneNoneNone
MLOC_37208.2CUST_2357_PI427708080AvailableAvailablecontig_2547977 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g34880.1 +1 6e-58 187 96/130 (74%) 13112.m03561 protein expressed protein
TAIR PP10 AT4G03150.1 +1 2e-39 139 68/126 (54%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1393731-1394529 REVERSE LENGTH=185