MLOC_37122 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3641831.752471.146611.08142
LEAShoots from the seedlings (10 cm shoot stage)1.163681.086960.9029410.792204
INF1Young developing inflorescences (5mm)3.747783.587853.371742.77108
INF2Developing inflorescences (1-1.5 cm)3.65024.143832.831023.59641
ROORoots from the seedlings (10 cm shoot stage)0.3993481.07170.856180.931394
NODDeveloping tillers at six leaf stage, 3rd internode0.5879520.6087330.6529451.77214
CAR5Developing grain, bracts removed (5 DPA)1.960382.121662.425811.81275
CAR15Developing grain, bracts removed (15 DPA)0.6246580.6074150.571871.28607



CDS Structure of MLOC_37122






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37122.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_37122.1CUST_11463_PI427708080AvailableAvailablecontig_2547805 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g42760.1 +1 0.0 828 425/597 (71%) 13110.m04031 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT1G16830.1 +1 2e-76 263 153/517 (30%) Pentatricopeptide repeat (PPR) superfamily protein | chr1:5760793-5762619 FORWARD LENGTH=608