MLOC_37052 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.0570850.5897410.265084
LEAShoots from the seedlings (10 cm shoot stage)18.613474.257249.900843.3479
INF1Young developing inflorescences (5mm)0.10671300.2664680.193862
INF2Developing inflorescences (1-1.5 cm)0.04905880.1358530.5709680.245313
ROORoots from the seedlings (10 cm shoot stage)0.8776886.1978911.93357.64726
NODDeveloping tillers at six leaf stage, 3rd internode65.183547.6533973.251715.521
CAR5Developing grain, bracts removed (5 DPA)1.817140.834272.073161.51382
CAR15Developing grain, bracts removed (15 DPA)32.846426.820221.439668.292



CDS Structure of MLOC_37052






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37052.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365564NoneNoneNoneNone
AK375165NoneNoneNoneNone
MLOC_37052.1CUST_2345_PI427708080AvailableAvailablecontig_2547711 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g05360.1 -3 8e-47 157 96/118 (81%) 13107.m00487 protein photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
TAIR PP10 AT1G79040.1 -3 4e-29 110 56/88 (64%) | Symbols: PSBR | photosystem II subunit R | chr1:29736085-29736781 FORWARD LENGTH=140