MLOC_36987 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.024622.149822.617452.87171
LEAShoots from the seedlings (10 cm shoot stage)0.7923720.8201140.582650.728361
INF1Young developing inflorescences (5mm)7.5892910.51689.237179.78991
INF2Developing inflorescences (1-1.5 cm)8.539229.221947.2101811.591
ROORoots from the seedlings (10 cm shoot stage)2.209651.663555.223193.32562
NODDeveloping tillers at six leaf stage, 3rd internode0.0184370.03785170.08846450.173874
CAR5Developing grain, bracts removed (5 DPA)0.1218010.2983420.04934240.231349
CAR15Developing grain, bracts removed (15 DPA)0.2354770.1112090.3813670.630701



CDS Structure of MLOC_36987






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36987.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368858NoneNoneNoneNone
MLOC_36987.1CUST_2336_PI427708080AvailableAvailablecontig_2547603 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g09480.1 +1 4e-67 218 127/189 (67%) 13105.m01056 protein OsIAA16 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10 AT3G16500.1 +1 3e-51 177 93/159 (58%) | Symbols: PAP1, IAA26 | phytochrome-associated protein 1 | chr3:5612801-5614208 REVERSE LENGTH=269