MLOC_36970 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.08727450.06360490.09503640.0814051
LEAShoots from the seedlings (10 cm shoot stage)0.2266130.1782490.07830870.143484
INF1Young developing inflorescences (5mm)0.2414920.3024790.421840.268009
INF2Developing inflorescences (1-1.5 cm)0.4522110.8184380.6988580.726886
ROORoots from the seedlings (10 cm shoot stage)0.09510070.1251230.1048230.155444
NODDeveloping tillers at six leaf stage, 3rd internode0.4494980.5373750.03529631.51315
CAR5Developing grain, bracts removed (5 DPA)163.843152.549149.895149.723
CAR15Developing grain, bracts removed (15 DPA)0.9845861.266691.638792.80138



CDS Structure of MLOC_36970






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36970.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36970.2CUST_11446_PI427708080AvailableAvailablecontig_2547576 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g58600.1 +2 0.0 1163 586/868 (68%) 13103.m06435 protein PAZ domain containing protein, putative, expressed
TAIR PP10 AT1G48410.1 +2 0.0 998 511/871 (59%) | Symbols: AGO1 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr1:17886285-17891892 REVERSE LENGTH=1048