MLOC_3688 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.598344.94934.610625.50207
LEAShoots from the seedlings (10 cm shoot stage)4.172791.105281.502161.78672
INF1Young developing inflorescences (5mm)17.971718.197718.048616.4931
INF2Developing inflorescences (1-1.5 cm)24.925729.227929.657432.357
ROORoots from the seedlings (10 cm shoot stage)3.217734.812496.469545.3979
NODDeveloping tillers at six leaf stage, 3rd internode0.7848031.128620.5105752.41279
CAR5Developing grain, bracts removed (5 DPA)9.2525910.237210.874610.4843
CAR15Developing grain, bracts removed (15 DPA)0.1222080.2370810.2933260.598749



CDS Structure of MLOC_3688






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3688.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3688.2CUST_11433_PI427708080AvailableAvailablecontig_132700 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g38540.1 -1 3e-60 193 86/101 (85%) 13109.m03835 protein plastocyanin-like domain containing protein, putative, expressed
TAIR PP10 AT2G27035.1 -1 8e-20 85 40/97 (41%) | Symbols: ENODL20, AtENODL20 | early nodulin-like protein 20 | chr2:11535670-11536251 FORWARD LENGTH=163