MLOC_3685 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1570870.3192940.1582350.237379
LEAShoots from the seedlings (10 cm shoot stage)0.3101590.2164960.07610490.17703
INF1Young developing inflorescences (5mm)0.1198480.1853030.03297470.0981821
INF2Developing inflorescences (1-1.5 cm)0.2011130.2144770.1608380.210426
ROORoots from the seedlings (10 cm shoot stage)0.2354870.4868210.45470.53415
NODDeveloping tillers at six leaf stage, 3rd internode0.1794410.2196620.3747210.866114
CAR5Developing grain, bracts removed (5 DPA)1.004660.8087741.072160.88013
CAR15Developing grain, bracts removed (15 DPA)4.159254.023564.086668.62878



CDS Structure of MLOC_3685






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3685.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3685.2CUST_11428_PI427708080AvailableAvailablecontig_132689 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g32650.1 -3 0.0 1095 571/663 (86%) 13109.m03258 protein leucyl-tRNA synthetase, cytoplasmic, putative, expressed
TAIR PP10 AT1G09620.1 -3 0.0 879 464/658 (71%) ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091