MLOC_3684 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.606783.944373.488723.8469
LEAShoots from the seedlings (10 cm shoot stage)6.316611.544012.332052.68396
INF1Young developing inflorescences (5mm)0.3737290.4433630.3265610.325263
INF2Developing inflorescences (1-1.5 cm)0.470850.4379970.3657330.481762
ROORoots from the seedlings (10 cm shoot stage)4.39323.790492.283823.93642
NODDeveloping tillers at six leaf stage, 3rd internode3.562213.672516.7463610.7703
CAR5Developing grain, bracts removed (5 DPA)4.93065.225534.971975.0025
CAR15Developing grain, bracts removed (15 DPA)0.4988850.5168530.6287861.31552



CDS Structure of MLOC_3684






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3684.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373874NoneNoneNoneNone
MLOC_3684.1NoneAvailableAvailablecontig_132689 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g41130.1 -3 6e-54 188 134/198 (68%) 13110.m03827 protein AP2 domain containing protein, expressed
TAIR PP10 AT5G11590.1 -3 6e-33 127 62/71 (87%) | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236