MLOC_36811 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.6007910.52059.3241211.5026
LEAShoots from the seedlings (10 cm shoot stage)9.831577.901498.867999.30633
INF1Young developing inflorescences (5mm)19.424520.601121.325920.4749
INF2Developing inflorescences (1-1.5 cm)26.256323.287725.176530.5354
ROORoots from the seedlings (10 cm shoot stage)8.7554510.283710.110515.9444
NODDeveloping tillers at six leaf stage, 3rd internode4.056864.003215.8294719.6718
CAR5Developing grain, bracts removed (5 DPA)15.430115.716314.430417.1474
CAR15Developing grain, bracts removed (15 DPA)9.311959.1037510.264324.508



CDS Structure of MLOC_36811






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36811.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374260NoneNoneNoneNone
MLOC_36811.2CUST_2318_PI427708080AvailableAvailablecontig_2547367 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g12800.1 +3 4e-137 409 266/314 (85%) 13109.m01170 protein zinc finger Ran-binding domain-containing protein 2, putative, expressed
TAIR PP10 AT1G50300.1 +3 2e-104 321 220/313 (70%) | Symbols: TAF15 | TBP-associated factor 15 | chr1:18628818-18631662 REVERSE LENGTH=372