MLOC_36793 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.230779.9398710.79418.78009
LEAShoots from the seedlings (10 cm shoot stage)7.402624.111843.217744.24407
INF1Young developing inflorescences (5mm)28.562930.565931.204623.1848
INF2Developing inflorescences (1-1.5 cm)25.574928.068327.500527.6099
ROORoots from the seedlings (10 cm shoot stage)2.591245.945218.153386.45476
NODDeveloping tillers at six leaf stage, 3rd internode1.025611.374415.031776.94803
CAR5Developing grain, bracts removed (5 DPA)10.417112.037112.380510.4872
CAR15Developing grain, bracts removed (15 DPA)2.239922.723392.847895.23732



CDS Structure of MLOC_36793






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36793.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36793.1CUST_11414_PI427708080AvailableAvailablecontig_2547343 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g47380.1 +2 0.0 615 310/402 (77%) 13104.m04798 protein coiled-coil domain-containing protein 139, putative, expressed
TAIR PP10 AT1G20410.1 +2 7e-145 437 241/529 (46%) Pseudouridine synthase family protein | chr1:7079049-7082504 REVERSE LENGTH=504