MLOC_36790 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.835634.143632.119634.2648
LEAShoots from the seedlings (10 cm shoot stage)29.154313.97211.939616.7612
INF1Young developing inflorescences (5mm)31.620133.452534.91131.0423
INF2Developing inflorescences (1-1.5 cm)32.398635.868330.663840.8481
ROORoots from the seedlings (10 cm shoot stage)9.1682624.603116.096230.5788
NODDeveloping tillers at six leaf stage, 3rd internode24.630730.016221.8534104.703
CAR5Developing grain, bracts removed (5 DPA)31.071429.853429.631833.7698
CAR15Developing grain, bracts removed (15 DPA)3.998913.912284.3344110.45



CDS Structure of MLOC_36790






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36790.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36790.3CUST_11413_PI427708080AvailableAvailablecontig_2547340 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g61860.1 -2 0.0 877 477/573 (83%) 13101.m06607 protein TBC domain containing protein, expressed
TAIR PP10 AT3G55020.1 -2 0.0 643 357/593 (60%) Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:20389278-20394713 REVERSE LENGTH=777