MLOC_36758 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.457310.674780.7845850.822833
LEAShoots from the seedlings (10 cm shoot stage)6.237459.641278.577226.09484
INF1Young developing inflorescences (5mm)0.6266030.371880.8854630.491033
INF2Developing inflorescences (1-1.5 cm)1.005380.5785440.9390260.828729
ROORoots from the seedlings (10 cm shoot stage)6.345813.489115.537924.16415
NODDeveloping tillers at six leaf stage, 3rd internode5.3488510.29727.0058725.9395
CAR5Developing grain, bracts removed (5 DPA)0.3274070.5133310.4644070.384091
CAR15Developing grain, bracts removed (15 DPA)0.147860.139480.184080.345816



CDS Structure of MLOC_36758






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36758.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36758.1NoneAvailableAvailablecontig_2547291 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g12160.1 +2 5e-83 280 145/177 (82%) 13101.m01310 protein OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed
TAIR PP10 AT2G46370.3 +2 1e-52 192 96/175 (55%) | Symbols: JAR1, FIN219 | Auxin-responsive GH3 family protein | chr2:19034579-19036369 FORWARD LENGTH=496