MLOC_36752 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.822112.247915.256214.2962
LEAShoots from the seedlings (10 cm shoot stage)16.346821.685727.273120.0128
INF1Young developing inflorescences (5mm)35.890735.663450.064836.736
INF2Developing inflorescences (1-1.5 cm)5.125855.197637.104336.60103
ROORoots from the seedlings (10 cm shoot stage)16.56315.735610.231120.1243
NODDeveloping tillers at six leaf stage, 3rd internode30.983530.72929.4478103.543
CAR5Developing grain, bracts removed (5 DPA)19.444917.97520.219120.115
CAR15Developing grain, bracts removed (15 DPA)108.41691.037592.9321244.112



CDS Structure of MLOC_36752






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36752.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357581NoneNoneNoneNone
MLOC_36752.2CUST_2314_PI427708080AvailableAvailablecontig_2547286 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49140.1 +1 0.0 788 452/593 (76%) 13105.m05251 protein CGMC_MAPKCMGC_2.8 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
TAIR PP10 AT2G42880.1 +1 0.0 648 338/411 (82%) | Symbols: ATMPK20, MPK20 | MAP kinase 20 | chr2:17840572-17843947 REVERSE LENGTH=606