MLOC_36713 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.298897.717819.307166.91157
LEAShoots from the seedlings (10 cm shoot stage)5.574586.689099.741715.63866
INF1Young developing inflorescences (5mm)3.98025.500274.618963.49703
INF2Developing inflorescences (1-1.5 cm)2.492363.377872.576912.83784
ROORoots from the seedlings (10 cm shoot stage)9.5221714.83289.6690414.2593
NODDeveloping tillers at six leaf stage, 3rd internode7.506256.623667.6166320.2221
CAR5Developing grain, bracts removed (5 DPA)7.160797.97258.066626.6138
CAR15Developing grain, bracts removed (15 DPA)2.418972.611363.197915.31516



CDS Structure of MLOC_36713






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36713.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364146NoneNoneNoneNone
MLOC_36713.1CUST_2307_PI427708080AvailableAvailablecontig_2547229 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g38380.1 +1 0.0 632 335/402 (83%) 13107.m03969 protein transmembrane protein 49, putative, expressed
TAIR PP10 AT1G05360.1 +1 6e-153 452 242/399 (61%) BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G14950.1); Has 332 Blast hits to 326 proteins in 115 species: Archae - 0; Bacteria - 11; Metazoa - 174; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). | chr1:1564816-1567278 FORWARD LENGTH=416