MLOC_36681 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.1766911.278510.67619.00727
LEAShoots from the seedlings (10 cm shoot stage)11.42858.986868.694478.2081
INF1Young developing inflorescences (5mm)28.97826.984325.4620.6016
INF2Developing inflorescences (1-1.5 cm)21.67626.256223.697223.8331
ROORoots from the seedlings (10 cm shoot stage)2.862067.619345.802697.81835
NODDeveloping tillers at six leaf stage, 3rd internode2.084293.298526.0737612.5696
CAR5Developing grain, bracts removed (5 DPA)10.540910.794311.90029.66301
CAR15Developing grain, bracts removed (15 DPA)4.996174.402994.211059.21874



CDS Structure of MLOC_36681






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36681.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36681.1CUST_11394_PI427708080AvailableAvailablecontig_2547172 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g41490.1 +1 0.0 1153 612/743 (82%) 13104.m04071 protein DNA-directed RNA polymerase III subunit RPC1, putative, expressed
TAIR PP10 AT5G60040.1 +1 0.0 788 434/746 (58%) | Symbols: NRPC1 | nuclear RNA polymerase C1 | chr5:24173590-24183269 FORWARD LENGTH=1376