MLOC_36669 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains27.533335.376629.691629.828
LEAShoots from the seedlings (10 cm shoot stage)20.726823.018813.312115.1774
INF1Young developing inflorescences (5mm)57.06956.278354.04244.2929
INF2Developing inflorescences (1-1.5 cm)49.082843.879237.579646.6643
ROORoots from the seedlings (10 cm shoot stage)16.29119.01437.926622.981
NODDeveloping tillers at six leaf stage, 3rd internode7.679723.730316.0719112.4238
CAR5Developing grain, bracts removed (5 DPA)19.102318.376515.525216.5185
CAR15Developing grain, bracts removed (15 DPA)5.129234.534743.376219.84388



CDS Structure of MLOC_36669






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36669.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374820NoneNoneNoneNone
MLOC_36669.2CUST_191_PI427708083AvailableAvailablecontig_2547151 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g14980.2 -2 4e-29 109 54/90 (60%) 13101.m01657 protein RPA3 - Putative single-stranded DNA binding complex subunit 3, expressed
TAIR PP10 AT3G52630.2 -2 1e-17 77 43/100 (43%) Nucleic acid-binding, OB-fold-like protein | chr3:19514184-19514596 FORWARD LENGTH=107