MLOC_36627 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.0508412.01688.67999.75969
LEAShoots from the seedlings (10 cm shoot stage)16.41095.368684.529788.03437
INF1Young developing inflorescences (5mm)8.810435.994954.42895.68633
INF2Developing inflorescences (1-1.5 cm)2.663823.372292.563653.2507
ROORoots from the seedlings (10 cm shoot stage)0.4292892.174781.881572.45485
NODDeveloping tillers at six leaf stage, 3rd internode0.7658270.6674580.3300252.24999
CAR5Developing grain, bracts removed (5 DPA)6.800895.816136.837386.21109
CAR15Developing grain, bracts removed (15 DPA)0.4606570.3333280.2460330.871371



CDS Structure of MLOC_36627






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36627.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36627.1CUST_11382_PI427708080AvailableAvailablecontig_2547072 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g10800.1 +2 0.0 1749 844/1037 (81%) 13101.m01166 protein pentatricopeptide, putative, expressed
TAIR PP10 AT4G18750.1 +2 0.0 815 417/795 (52%) | Symbols: DOT4 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10304850-10307465 FORWARD LENGTH=871