MLOC_36623 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains27.884328.208924.822835.0471
LEAShoots from the seedlings (10 cm shoot stage)15.97079.9746710.135911.5398
INF1Young developing inflorescences (5mm)47.256947.584445.576247.0327
INF2Developing inflorescences (1-1.5 cm)39.291447.684539.78158.1097
ROORoots from the seedlings (10 cm shoot stage)15.508825.16320.156238.0142
NODDeveloping tillers at six leaf stage, 3rd internode0.9366171.335473.593426.60551
CAR5Developing grain, bracts removed (5 DPA)30.874232.830532.217540.1273
CAR15Developing grain, bracts removed (15 DPA)7.699527.106036.8686920.3551



CDS Structure of MLOC_36623






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36623.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248910.1NoneNoneNoneNone
MLOC_36623.1CUST_2296_PI427708080AvailableAvailablecontig_2547062 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g01230.2 -3 0.0 712 382/478 (80%) 13102.m12347 protein ribosomal protein, putative, expressed
TAIR PP10 AT1G64880.1 -3 1e-156 466 231/411 (56%) Ribosomal protein S5 family protein | chr1:24105713-24108780 FORWARD LENGTH=515