MLOC_36621 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains81.766769.515777.304571.5905
LEAShoots from the seedlings (10 cm shoot stage)35.328934.804945.569131.4913
INF1Young developing inflorescences (5mm)35.795840.774439.043630.8164
INF2Developing inflorescences (1-1.5 cm)27.332228.855532.60329.5507
ROORoots from the seedlings (10 cm shoot stage)72.472953.24264.288766.6583
NODDeveloping tillers at six leaf stage, 3rd internode33.540627.709124.548682.2841
CAR5Developing grain, bracts removed (5 DPA)36.949741.034535.222234.6684
CAR15Developing grain, bracts removed (15 DPA)10.744610.28938.6456622.0592



CDS Structure of MLOC_36621






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36621.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250133.1NoneNoneNoneNone
MLOC_36621.2CUST_2295_PI427708080AvailableAvailablecontig_2547061 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g34620.9 -1 6e-78 242 115/164 (70%) 13101.m15035 protein OsGrx_S15.1 - glutaredoxin subgroup II, expressed
TAIR PP10 AT3G15660.2 -1 5e-50 168 82/134 (61%) | Symbols: ATGRX4, GRX4 | glutaredoxin 4 | chr3:5308134-5309383 REVERSE LENGTH=169