MLOC_36620 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains150.957148.703146.866148.453
LEAShoots from the seedlings (10 cm shoot stage)55.2356.090948.047543.8835
INF1Young developing inflorescences (5mm)149.531151.038126.912122.669
INF2Developing inflorescences (1-1.5 cm)77.219790.725391.132593.9125
ROORoots from the seedlings (10 cm shoot stage)56.878253.223574.564864.5205
NODDeveloping tillers at six leaf stage, 3rd internode114.07190.108990.9035288.929
CAR5Developing grain, bracts removed (5 DPA)42.178745.834340.16641.8851
CAR15Developing grain, bracts removed (15 DPA)7.241355.160125.3906514.8396



CDS Structure of MLOC_36620






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36620.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252065.1NoneNoneNoneNone
MLOC_36620.3CUST_2294_PI427708080AvailableAvailablecontig_2547061 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g07960.3 +2 7e-138 397 199/219 (91%) 13101.m00823 protein acyl-protein thioesterase, putative, expressed
TAIR PP10 AT5G20060.3 +2 2e-114 336 163/239 (68%) alpha/beta-Hydrolases superfamily protein | chr5:6776800-6779447 FORWARD LENGTH=252