MLOC_36567 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.168674.802735.028455.13615
LEAShoots from the seedlings (10 cm shoot stage)3.233451.85662.236971.97342
INF1Young developing inflorescences (5mm)6.653776.466088.835826.27233
INF2Developing inflorescences (1-1.5 cm)6.985938.278759.429118.91272
ROORoots from the seedlings (10 cm shoot stage)9.139355.5441610.3347.38005
NODDeveloping tillers at six leaf stage, 3rd internode4.071153.115775.635269.8256
CAR5Developing grain, bracts removed (5 DPA)4.784874.853264.444984.63419
CAR15Developing grain, bracts removed (15 DPA)1.836711.182071.358673.66443



CDS Structure of MLOC_36567






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36567.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365565NoneNoneNoneNone
MLOC_36567.1CUST_2282_PI427708080AvailableAvailablecontig_2546983 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g48650.1 +2 3e-67 214 146/167 (87%) 13102.m05505 protein acetyltransferase, GNAT family, putative, expressed
TAIR PP10 AT5G15770.1 +2 2e-25 101 69/149 (46%) | Symbols: AtGNA1, GNA1 | glucose-6-phosphate acetyltransferase 1 | chr5:5144093-5144542 REVERSE LENGTH=149