MLOC_36518 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5235990.8462220.9969950.827394
LEAShoots from the seedlings (10 cm shoot stage)000.02994320.027756
INF1Young developing inflorescences (5mm)0.01755820.1665260.1343810.0945327
INF2Developing inflorescences (1-1.5 cm)0.2743780.6260551.086810.675753
ROORoots from the seedlings (10 cm shoot stage)0.2603150.1023280.06204680.158649
NODDeveloping tillers at six leaf stage, 3rd internode00.04297190.01658020.195174
CAR5Developing grain, bracts removed (5 DPA)14.883410.511210.659111.719
CAR15Developing grain, bracts removed (15 DPA)1.753091.833381.236273.91204



CDS Structure of MLOC_36518






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36518.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36518.2CUST_11365_PI427708080AvailableAvailablecontig_2546912 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g28850.1 +3 0.0 877 464/815 (57%) 13107.m02893 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT1G48410.3 +3 0.0 825 443/842 (53%) | Symbols: AGO1 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr1:17886285-17891892 REVERSE LENGTH=1050