MLOC_36477 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains49.6541.739639.149542.0169
LEAShoots from the seedlings (10 cm shoot stage)23.872726.48536.602123.0966
INF1Young developing inflorescences (5mm)30.382231.900632.584526.6956
INF2Developing inflorescences (1-1.5 cm)26.140425.63728.053628.991
ROORoots from the seedlings (10 cm shoot stage)49.826556.881949.369360.7744
NODDeveloping tillers at six leaf stage, 3rd internode43.385339.930848.7701115.323
CAR5Developing grain, bracts removed (5 DPA)52.059262.872853.581254.5777
CAR15Developing grain, bracts removed (15 DPA)31.957131.908830.692978.0381



CDS Structure of MLOC_36477






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36477.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370328NoneNoneNoneNone
MLOC_36477.1CUST_6939_PI427708080AvailableAvailablecontig_2546861 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g36480.1 +1 1e-79 243 143/171 (84%) 13110.m03305 protein expressed protein
TAIR PP10 AT5G51510.1 +1 4e-32 119 75/172 (44%) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1352 (InterPro:IPR009787); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20921512-20922818 FORWARD LENGTH=170