- Predicted Gene MLOC_36477
MLOC_36477 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_36477_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 49.65 | 41.7396 | 39.1495 | 42.0169 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 23.8727 | 26.485 | 36.6021 | 23.0966 |
INF1 | Young developing inflorescences (5mm) | 30.3822 | 31.9006 | 32.5845 | 26.6956 |
INF2 | Developing inflorescences (1-1.5 cm) | 26.1404 | 25.637 | 28.0536 | 28.991 |
ROO | Roots from the seedlings (10 cm shoot stage) | 49.8265 | 56.8819 | 49.3693 | 60.7744 |
NOD | Developing tillers at six leaf stage, 3rd internode | 43.3853 | 39.9308 | 48.7701 | 115.323 |
CAR5 | Developing grain, bracts removed (5 DPA) | 52.0592 | 62.8728 | 53.5812 | 54.5777 |
CAR15 | Developing grain, bracts removed (15 DPA) | 31.9571 | 31.9088 | 30.6929 | 78.0381 |
CDS Structure of MLOC_36477
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_36477.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os10g36480.1 |
+1 |
1e-79 |
243 |
143/171 (84%) |
13110.m03305 protein expressed protein |
TAIR PP10 |
AT5G51510.1 |
+1 |
4e-32 |
119 |
75/172 (44%) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1352 (InterPro:IPR009787); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20921512-20922818 FORWARD LENGTH=170 |