MLOC_36476 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.900135.18965.084614.24957
LEAShoots from the seedlings (10 cm shoot stage)4.53962.932312.715242.8184
INF1Young developing inflorescences (5mm)12.386513.612713.129610.2959
INF2Developing inflorescences (1-1.5 cm)17.442416.553316.457317.4554
ROORoots from the seedlings (10 cm shoot stage)2.827354.592595.067024.90367
NODDeveloping tillers at six leaf stage, 3rd internode1.943942.810682.846419.08832
CAR5Developing grain, bracts removed (5 DPA)10.44599.961329.940579.20081
CAR15Developing grain, bracts removed (15 DPA)2.149511.666452.183594.24



CDS Structure of MLOC_36476






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36476.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36476.1CUST_17652_PI427708080AvailableAvailablecontig_2546861 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g36490.1 +3 0.0 1132 601/730 (82%) 13110.m03304 protein HEAT repeat family protein, putative, expressed
TAIR PP10 AT3G60740.1 +3 0.0 1365 755/1256 (60%) | Symbols: TTN1, EMB133, TFC D, CHO | ARM repeat superfamily protein | chr3:22447385-22453325 REVERSE LENGTH=1254