MLOC_36471 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1143.05887.64776.137991.499
LEAShoots from the seedlings (10 cm shoot stage)431.739239.253235.831256.493
INF1Young developing inflorescences (5mm)1170.61238.871262.31120.27
INF2Developing inflorescences (1-1.5 cm)964.047877.329811.771046.38
ROORoots from the seedlings (10 cm shoot stage)663.025575.969757.807756.051
NODDeveloping tillers at six leaf stage, 3rd internode57.806346.5342124.983197.335
CAR5Developing grain, bracts removed (5 DPA)359.683330.943359.018370.312
CAR15Developing grain, bracts removed (15 DPA)93.372896.651585.6902238.479



CDS Structure of MLOC_36471






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36471.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355485NoneNoneNoneNone
MLOC_36471.1CUST_2268_PI427708080AvailableAvailablecontig_2546856 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g32920.1 +2 1e-93 283 139/140 (99%) 13110.m02891 protein ribosomal protein, putative, expressed
TAIR PP10 AT3G04400.1 +2 5e-93 280 137/140 (98%) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167339-1168308 FORWARD LENGTH=140