MLOC_36421 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.075162.248163.141042.54205
LEAShoots from the seedlings (10 cm shoot stage)1.547052.668444.243361.96699
INF1Young developing inflorescences (5mm)5.339477.164825.904874.08419
INF2Developing inflorescences (1-1.5 cm)3.713244.294233.36563.52089
ROORoots from the seedlings (10 cm shoot stage)3.016513.363853.746173.31759
NODDeveloping tillers at six leaf stage, 3rd internode4.775583.396616.0779810.089
CAR5Developing grain, bracts removed (5 DPA)1.435622.371083.197321.74986
CAR15Developing grain, bracts removed (15 DPA)0.5050410.6456530.9352961.14775



CDS Structure of MLOC_36421






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36421.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36421.1CUST_5122_PI427708083AvailableAvailablecontig_2546773 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g46570.1 -1 7e-33 123 54/60 (90%) 13105.m04976 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT5G14530.1 -1 4e-21 90 38/59 (64%) Transducin/WD40 repeat-like superfamily protein | chr5:4684782-4686865 REVERSE LENGTH=330