MLOC_36420 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains131.181122.997132.812126.325
LEAShoots from the seedlings (10 cm shoot stage)60.135519.875628.374732.4066
INF1Young developing inflorescences (5mm)94.777191.4253105.24477.7047
INF2Developing inflorescences (1-1.5 cm)67.781381.219573.622782.2763
ROORoots from the seedlings (10 cm shoot stage)63.00176.949275.37990.2014
NODDeveloping tillers at six leaf stage, 3rd internode24.32224.243622.636681.648
CAR5Developing grain, bracts removed (5 DPA)87.131193.001394.839590.4615
CAR15Developing grain, bracts removed (15 DPA)309.186304.221289.34660.49



CDS Structure of MLOC_36420






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36420.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366683NoneNoneNoneNone
MLOC_36420.1CUST_187_PI427708083AvailableAvailablecontig_2546773 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g46580.1 +2 0.0 608 291/338 (86%) 13105.m04977 protein polyprenyl synthetase, putative, expressed
TAIR PP10 AT5G47770.1 +2 0.0 517 245/340 (72%) | Symbols: FPS1 | farnesyl diphosphate synthase 1 | chr5:19345297-19347415 FORWARD LENGTH=384