MLOC_36407 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.492564.175353.898873.12886
LEAShoots from the seedlings (10 cm shoot stage)3.327133.371234.109682.87182
INF1Young developing inflorescences (5mm)3.730333.438762.157012.54947
INF2Developing inflorescences (1-1.5 cm)2.408482.235362.506432.4244
ROORoots from the seedlings (10 cm shoot stage)2.794544.376564.337394.52147
NODDeveloping tillers at six leaf stage, 3rd internode5.431753.524922.9684910.5726
CAR5Developing grain, bracts removed (5 DPA)3.972063.095293.391253.13053
CAR15Developing grain, bracts removed (15 DPA)6.095395.360625.3766512.4864



CDS Structure of MLOC_36407






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36407.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36407.1NoneAvailableAvailablecontig_2546758 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g04050.1 +1 1e-86 293 136/192 (71%) 13103.m00412 protein protein kinase family protein, putative, expressed
TAIR PP10 AT1G63500.1 +1 5e-99 326 154/195 (79%) Protein kinase protein with tetratricopeptide repeat domain | chr1:23556015-23558403 FORWARD LENGTH=487