MLOC_36393 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.721821.080820.74518.6351
LEAShoots from the seedlings (10 cm shoot stage)18.113112.40111.769312.1333
INF1Young developing inflorescences (5mm)46.411844.283343.375835.9273
INF2Developing inflorescences (1-1.5 cm)40.330848.898139.116146.4233
ROORoots from the seedlings (10 cm shoot stage)7.3267115.279310.587316.2999
NODDeveloping tillers at six leaf stage, 3rd internode5.395927.2228310.236524.9172
CAR5Developing grain, bracts removed (5 DPA)25.094224.511723.188222.9093
CAR15Developing grain, bracts removed (15 DPA)4.520193.992264.990499.64348



CDS Structure of MLOC_36393






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36393.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249118.1NoneNoneNoneNone
MLOC_36393.1CUST_2256_PI427708080AvailableAvailablecontig_2546740 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g10770.1 -3 0.0 1183 589/639 (92%) 13109.m00952 protein OsTOP6B - Topoisomerase 6 subunit B, expressed
TAIR PP10 AT3G20780.1 -3 0.0 984 489/640 (76%) | Symbols: ATTOP6B, BIN3, HYP6, RHL3, TOP6B | topoisomerase 6 subunit B | chr3:7264025-7268498 REVERSE LENGTH=670