MLOC_36392 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.823261.551554.966561.775
LEAShoots from the seedlings (10 cm shoot stage)38.887643.206227.106135.8693
INF1Young developing inflorescences (5mm)43.095835.391339.090938.42
INF2Developing inflorescences (1-1.5 cm)39.881328.707634.31342.2977
ROORoots from the seedlings (10 cm shoot stage)15.189431.445743.06945.7449
NODDeveloping tillers at six leaf stage, 3rd internode41.0066.393037.8275427.2678
CAR5Developing grain, bracts removed (5 DPA)28.011529.991634.992635.4642
CAR15Developing grain, bracts removed (15 DPA)9.553557.6609510.684124.5799



CDS Structure of MLOC_36392






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36392.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36392.1CUST_12197_PI427708083AvailableAvailablecontig_2546740 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g10820.1 -3 3e-17 77 39/45 (87%) 13109.m00957 protein oxidoreductase domain protein, putative, expressed
TAIR PP10 AT3G20790.1 -3 5e-11 59 28/37 (76%) NAD(P)-binding Rossmann-fold superfamily protein | chr3:7268802-7271099 FORWARD LENGTH=355