MLOC_36358 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains43.075233.906933.325641.8506
LEAShoots from the seedlings (10 cm shoot stage)22.86548.7352610.603512.1938
INF1Young developing inflorescences (5mm)35.133437.354137.989935.4642
INF2Developing inflorescences (1-1.5 cm)38.329246.738639.908254.5735
ROORoots from the seedlings (10 cm shoot stage)57.081337.127836.046653.2832
NODDeveloping tillers at six leaf stage, 3rd internode62.328180.041850.8243233.646
CAR5Developing grain, bracts removed (5 DPA)30.582333.043829.944636.8677
CAR15Developing grain, bracts removed (15 DPA)4.459544.218015.0363112.5445



CDS Structure of MLOC_36358






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36358.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362955NoneNoneNoneNone
MLOC_36358.1CUST_2249_PI427708080AvailableAvailablecontig_2546669 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g43070.1 +3 6e-158 457 255/291 (88%) 13107.m04525 protein expressed protein
TAIR PP10 AT1G78150.2 +3 6e-84 266 152/291 (52%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:29404996-29406341 FORWARD LENGTH=274