- Predicted Gene MLOC_36358
MLOC_36358 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 43.0752 | 33.9069 | 33.3256 | 41.8506 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 22.8654 | 8.73526 | 10.6035 | 12.1938 |
INF1 | Young developing inflorescences (5mm) | 35.1334 | 37.3541 | 37.9899 | 35.4642 |
INF2 | Developing inflorescences (1-1.5 cm) | 38.3292 | 46.7386 | 39.9082 | 54.5735 |
ROO | Roots from the seedlings (10 cm shoot stage) | 57.0813 | 37.1278 | 36.0466 | 53.2832 |
NOD | Developing tillers at six leaf stage, 3rd internode | 62.3281 | 80.0418 | 50.8243 | 233.646 |
CAR5 | Developing grain, bracts removed (5 DPA) | 30.5823 | 33.0438 | 29.9446 | 36.8677 |
CAR15 | Developing grain, bracts removed (15 DPA) | 4.45954 | 4.21801 | 5.03631 | 12.5445 |
CDS Structure of MLOC_36358
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_36358.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g43070.1 |
+3 |
6e-158 |
457 |
255/291 (88%) |
13107.m04525 protein expressed protein |
TAIR PP10 |
AT1G78150.2 |
+3 |
6e-84 |
266 |
152/291 (52%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:29404996-29406341 FORWARD LENGTH=274 |