MLOC_36344 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains166.138232.928236.209220.077
LEAShoots from the seedlings (10 cm shoot stage)92.487976.699784.638775.5901
INF1Young developing inflorescences (5mm)68.020771.138961.180656.3659
INF2Developing inflorescences (1-1.5 cm)42.124752.233145.909350.8568
ROORoots from the seedlings (10 cm shoot stage)114.691145.685115.465175.067
NODDeveloping tillers at six leaf stage, 3rd internode42.309135.500329.7406121.982
CAR5Developing grain, bracts removed (5 DPA)95.283788.145895.626887.759
CAR15Developing grain, bracts removed (15 DPA)13.496912.605713.255828.9267



CDS Structure of MLOC_36344






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36344.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248257.1NoneNoneNoneNone
MLOC_36344.2CUST_2246_PI427708080AvailableAvailablecontig_2546638 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g04410.1 +3 0.0 1687 850/939 (91%) 13103.m00449 protein aconitate hydratase protein, putative, expressed
TAIR PP10 AT2G05710.1 +3 0.0 1518 758/932 (81%) | Symbols: ACO3 | aconitase 3 | chr2:2141591-2146350 FORWARD LENGTH=990