MLOC_36338 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.054524.835893.472874.38438
LEAShoots from the seedlings (10 cm shoot stage)7.714434.321833.212814.48529
INF1Young developing inflorescences (5mm)8.779087.861678.148957.41447
INF2Developing inflorescences (1-1.5 cm)13.80989.883249.8341413.1776
ROORoots from the seedlings (10 cm shoot stage)0.2772210.9277130.8853771.09641
NODDeveloping tillers at six leaf stage, 3rd internode1.414221.830483.012127.08042
CAR5Developing grain, bracts removed (5 DPA)3.18183.437453.340153.59549
CAR15Developing grain, bracts removed (15 DPA)0.3583050.4325050.4530411.04023



CDS Structure of MLOC_36338






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36338.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36338.1CUST_11341_PI427708080AvailableAvailablecontig_2546630 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g11310.1 -1 0.0 830 448/588 (76%) 13103.m01274 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT3G29290.1 -1 1e-150 455 235/446 (53%) | Symbols: emb2076 | Pentatricopeptide repeat (PPR) superfamily protein | chr3:11238421-11240125 FORWARD LENGTH=540