MLOC_36197 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.147810.2084530.1609790.128595
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.04260520.077449100.0599227
ROORoots from the seedlings (10 cm shoot stage)23.074867.183738.110746.7378
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)00.046996600.0336215
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_36197






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_36197.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_36197.1CUST_12191_PI427708083AvailableAvailablecontig_253919 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g07410.2 +1 1e-78 255 121/177 (68%) 13107.m00723 protein oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
TAIR PP10 AT4G10490.1 +1 3e-33 130 62/170 (36%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:6483900-6485179 FORWARD LENGTH=348