MLOC_3616 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.062085900.1332440.0877135
LEAShoots from the seedlings (10 cm shoot stage)000.1951760.123923
INF1Young developing inflorescences (5mm)0.07884990.045609200.056286
INF2Developing inflorescences (1-1.5 cm)0.0380520.037513400.0501744
ROORoots from the seedlings (10 cm shoot stage)0.343340.2531830.4075390.29264
NODDeveloping tillers at six leaf stage, 3rd internode0.7077580.5321111.914441.9569
CAR5Developing grain, bracts removed (5 DPA)0.2978960.4239660.7303540.452452
CAR15Developing grain, bracts removed (15 DPA)0.5867040.5940980.4761791.3196



CDS Structure of MLOC_3616






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3616.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3616.1NoneAvailableAvailablecontig_132057 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g43890.1 +2 1e-28 115 82/119 (69%) 13112.m04629 protein GNS1/SUR4 membrane family protein, putative, expressed
TAIR PP10 AT4G36830.1 +2 3e-16 79 60/118 (51%) | Symbols: HOS3-1 | GNS1/SUR4 membrane protein family | chr4:17349511-17350380 FORWARD LENGTH=289