MLOC_35934 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.071810.98058.861969.00472
LEAShoots from the seedlings (10 cm shoot stage)9.321085.685968.700464.96449
INF1Young developing inflorescences (5mm)7.165119.683419.425536.54617
INF2Developing inflorescences (1-1.5 cm)6.874138.18246.926137.03266
ROORoots from the seedlings (10 cm shoot stage)12.21686.877277.873425.91981
NODDeveloping tillers at six leaf stage, 3rd internode6.7329.38547.8413115.2736
CAR5Developing grain, bracts removed (5 DPA)14.047916.802313.546212.0642
CAR15Developing grain, bracts removed (15 DPA)1.798351.392791.709553.54827



CDS Structure of MLOC_35934






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_35934.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_35934.1CUST_11312_PI427708080AvailableAvailablecontig_252657 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g39670.1 +3 2e-83 257 150/185 (81%) 13105.m04184 protein prenylated rab acceptor, putative, expressed
TAIR PP10 AT2G40380.1 +3 7e-57 187 105/177 (59%) | Symbols: PRA1.B2 | prenylated RAB acceptor 1.B2 | chr2:16864734-16865375 REVERSE LENGTH=213