MLOC_35875 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains993.2011389.441237.221155.03
LEAShoots from the seedlings (10 cm shoot stage)352.502198.103189.744202.183
INF1Young developing inflorescences (5mm)295.661265.249205.003235.025
INF2Developing inflorescences (1-1.5 cm)158.94132.348121.709178.145
ROORoots from the seedlings (10 cm shoot stage)615.819658.548484.256690.392
NODDeveloping tillers at six leaf stage, 3rd internode1262.2399.642258.88933.634
CAR5Developing grain, bracts removed (5 DPA)425.006715.352586.828594.281
CAR15Developing grain, bracts removed (15 DPA)30.010225.929634.798370.3771



CDS Structure of MLOC_35875






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_35875.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_35875.1NoneAvailableAvailablecontig_2524776 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10 AT4G13940.4 -1 3e-13 63 31/36 (86%) | Symbols: HOG1, SAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056763 FORWARD LENGTH=325