MLOC_35591 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains132.942116.522116.68882.764
LEAShoots from the seedlings (10 cm shoot stage)75.85883.063375.684445.0698
INF1Young developing inflorescences (5mm)36.880843.453137.004922.0261
INF2Developing inflorescences (1-1.5 cm)25.151433.966528.040423.1355
ROORoots from the seedlings (10 cm shoot stage)61.945492.235159.899367.582
NODDeveloping tillers at six leaf stage, 3rd internode108.40667.001362.1505153.598
CAR5Developing grain, bracts removed (5 DPA)88.145289.347982.253259.2316
CAR15Developing grain, bracts removed (15 DPA)17.828215.421912.501826.8125



CDS Structure of MLOC_35591






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_35591.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_35591.1CUST_12163_PI427708083AvailableAvailablecontig_2503481 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g40470.1 -1 5e-36 132 63/67 (94%) 13101.m04144 protein vacuolar ATP synthase subunit d, putative, expressed
TAIR PP10 AT3G28710.1 -1 1e-33 124 58/67 (87%) ATPase, V0/A0 complex, subunit C/D | chr3:10773144-10775594 REVERSE LENGTH=351