MLOC_35590 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.091477.534899.0474911.3043
LEAShoots from the seedlings (10 cm shoot stage)11.05017.3498912.27539.03984
INF1Young developing inflorescences (5mm)15.215418.143424.233126.2968
INF2Developing inflorescences (1-1.5 cm)32.82830.858634.9253.4514
ROORoots from the seedlings (10 cm shoot stage)3.6825110.08476.2131515.8516
NODDeveloping tillers at six leaf stage, 3rd internode10.093718.177219.75173.0156
CAR5Developing grain, bracts removed (5 DPA)29.842430.309123.759444.3739
CAR15Developing grain, bracts removed (15 DPA)6.4971110.78199.9458133.6811



CDS Structure of MLOC_35590






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_35590.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_35590.1CUST_11286_PI427708080AvailableAvailablecontig_2503218 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g10770.1 -3 3e-15 69 29/41 (71%) 13103.m01208 protein helix-loop-helix DNA-binding domain containing protein
TAIR PP10 AT5G43175.1 -3 4e-15 66 30/41 (73%) basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:17334261-17335234 FORWARD LENGTH=223