- Predicted Gene MLOC_35590
MLOC_35590 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 3.09147 | 7.53489 | 9.04749 | 11.3043 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 11.0501 | 7.34989 | 12.2753 | 9.03984 |
INF1 | Young developing inflorescences (5mm) | 15.2154 | 18.1434 | 24.2331 | 26.2968 |
INF2 | Developing inflorescences (1-1.5 cm) | 32.828 | 30.8586 | 34.92 | 53.4514 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.68251 | 10.0847 | 6.21315 | 15.8516 |
NOD | Developing tillers at six leaf stage, 3rd internode | 10.0937 | 18.1772 | 19.751 | 73.0156 |
CAR5 | Developing grain, bracts removed (5 DPA) | 29.8424 | 30.3091 | 23.7594 | 44.3739 |
CAR15 | Developing grain, bracts removed (15 DPA) | 6.49711 | 10.7819 | 9.94581 | 33.6811 |
CDS Structure of MLOC_35590
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_35590.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g10770.1 |
-3 |
3e-15 |
69 |
29/41 (71%) |
13103.m01208 protein helix-loop-helix DNA-binding domain containing protein |
TAIR PP10 |
AT5G43175.1 |
-3 |
4e-15 |
66 |
30/41 (73%) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:17334261-17335234 FORWARD LENGTH=223 |