MLOC_35400 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.565445.458668.296296.36224
LEAShoots from the seedlings (10 cm shoot stage)23.826129.208825.703723.6972
INF1Young developing inflorescences (5mm)6.93164.944017.422825.34929
INF2Developing inflorescences (1-1.5 cm)5.578735.157044.411875.78506
ROORoots from the seedlings (10 cm shoot stage)11.36313.254884.499636.12084
NODDeveloping tillers at six leaf stage, 3rd internode19.255718.11879.8429759.7171
CAR5Developing grain, bracts removed (5 DPA)2.978451.832492.194042.30025
CAR15Developing grain, bracts removed (15 DPA)00.23005700.618893



CDS Structure of MLOC_35400






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_35400.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_35400.1CUST_4971_PI427708083AvailableAvailablecontig_248116 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g49040.1 -2 4e-28 107 77/101 (76%) 13106.m05230 protein Myb-like DNA-binding domain containing protein, putative, expressed
TAIR PP10 AT3G13040.2 -2 1e-19 84 66/103 (64%) myb-like HTH transcriptional regulator family protein | chr3:4172415-4174456 REVERSE LENGTH=449